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Single cell DNA methylation ageing in mouse blood

Thomas M. Stubbs Marc Jan Bonder, Stephen J. Clark, Felix Krueger, Siyuan Luo, João Agostinho de Sousa, Aida M. Hashtroud, Anne-Katrien Stark, Steffen Rulands, Oliver Stegle, Wolf Reik, Ferdinand von Meyenn

Multi-omic rejuvenation of human cells by maturation phase transient reprogramming

Thomas M. Stubbs Diljeet Gill, Aled Parry, Fátima Santos, Hanneke Okkenhaug, Christopher D Todd, Irene Hernando-Herraez, Inês Milagre, Wolf Reik

Multi-omic rejuvenation of human cells by maturation phase transient reprogramming

Thomas M. Stubbs Diljeet Gill, Aled Parry, Fátima Santos, Irene Hernando-Herraez, Inês Milagre, Wolf Reik,

Transcriptome and epigenome diversity and plasticity of muscle stem cells following transplantation

Thomas M. Stubbs Brendan Evano, John M. Greally, Diljeet Gill, Irene Hernando-Herraez, Glenda Comai, Pierre-Henri Commere, Wolf Reik, Shahragim Tajbakhsh

Ageing affects DNA methylation drift and transcriptional cell-to-cell variability in mouse muscle stem cells

Thomas M. Stubbs Irene Hernando-Herraez, Brendan Evano, Pierre-Henri Commere, Marc Jan Bonder, Stephen Clark, Simon Andrews, Shahragim Tajbakhsh, Wolf Reik

Screening for genes that accelerate the epigenetic ageing clock in humans reveals a role for the H3K36 methyltransferase NSD1

Daniel E. Martin-Herranz, Thomas M. Stubbs Erfan Aref-Eshghi, Marc Jan Bonder, Oliver Stegle, Bekim Sadikovic, Wolf Reik, Janet M. Thornton

scNMT-seq enables joint profiling of chromatin accessibility DNA methylation and transcription in single cells.

Thomas M. Stubbs Clark SJ, Argelaguet R, Kapourani CA, Lee HJ, Alda-Catalinas C, Krueger F, Sanguinetti G, Kelsey G, Marioni JC, Stegle O, Reik W

cuRRBS: simple and robust evaluation of enzyme combinations for reduced representation approaches

Daniel E. Martin-Herranz, Thomas M. Stubbs António J. M. Ribeiro, Felix Krueger, Janet M. Thornton, Wolf Reik

Multi-tissue DNA methylation age predictor in mouse.

Thomas M. Stubbs Bonder MJ, Stark AK, Krueger F; BI Ageing Clock Team; von Meyenn F, Stegle O, Reik W.

Dietary restriction protects from age-associated DNA methylation and induces epigenetic reprogramming of lipid metabolism.

Thomas M. Stubbs Hahn O, Grönke S, Ficz G, Hendrich O, Krueger F, Andrews S, Zhang Q, Wakelam MJ, Beyer A, Reik W, Partridge L.

Gender Differences in Global but Not Targeted Demethylation in iPSC Reprogramming.

Thomas M. Stubbs Milagre I, King MR, Spindel J, Santos F, Krueger F, Bachman M, Segonds-Pichon A, Balasubramanian S, Andrews SR, Dean W, Reik W.

MERVL/Zscan4 Network Activation Results in Transient Genome-wide DNA Demethylation of mESCs

Thomas M. Stubbs Mélanie A. Eckersley-Maslin, Valentine Svensson, Christel Krueger, Pascal Giehr, Felix Krueger, Ricardo J. Miragaia, Charalampos Kyriakopoulos, Rebecca V. Berrens, Inês Milagre, Jörn Walter, Sarah A. Teichmann, Wolf Reik

The RNA-dependent RNA polymerase of the influenza A virus.

Thomas M. Stubbs Te Velthuis AJ

The CADENCE pilot trial – Promoting physical activity in bladder cancer survivors: A protocol paper

Adam Abbs Lee Smith, Anne Marie Carrie, Mark A Tully, Yvonne Barnett, Laurie T Butler, Claire Gillvray, Rosie Lindsay, Mike Trott, Olawale Olanrewaju, Lin Yang, Cristian P Ilie

Human Immunodeficiency Virus Infection and Diverse Physical Health Outcomes: An Umbrella Review of Meta-analyses of Observational Studies

Adam Abbs Igor Grabovac, Nicola Veronese, Sinisa Grabovac, Sandra Haider, Sarah E Jackson, Ai Koyanagi, Michael Meilinger, Brendon Stubbs, Joseph Firth, Pinar Soysal, Francesco Di Gennaro, Jacopo Demurtas, Daragh T. Mcdermott, Lin Yang, Lee Smith

Telomere length and health outcomes: An umbrella review of systematic reviews and meta-analyses of observational studies

Adam Abbs Lee Smith, Claudio Luchini, Jacopo Demurtas, Pinar Soysal, Brendon Stubbs, Mark Hamer, Alessia Nottegar, Rita T. Lawlor, Guillermo Felipe López-Sánchez, Joseph Firth, Ai Koyanagi, Justin D. Roberts, Peter Willeit, Thomas Waldhör, Mike Loosemore, James A Johnstone, Lin Yang, Nicola Veronese

Listeria rhomboencephalitis

Adam Abbs Tp Nandakumar, Dalila Mooraby, Pyari Bose

Modularized CRISPR/dCas9 effector toolkit for target-specific gene regulation

Lisa J Schmunk Michael Agne, Ilona Blank, Alica J Emhardt, Christoph G Gäbelein, Fenja Gawlas, Nadine Gillich, Patrick Gonschorek, Thomas J Juretschke, Stefan D Krämer, Natalie Louis, Anne Müller, Alina Rudorf, Manuel C Scheidmann, Philipp M Schwenk, Maximilian R Stammnitz, Philipp M Warmer, Wilfried Weber, Adrian Fischer, Beate Kaufmann, Hanna J Wagner, Gerald Radziwill

Ratiometric gibberellin biosensors for the analysis of signaling dynamics and metabolism in plant protoplasts

Lisa J. Schmunk Jennifer Andres, Federico Grau‐Enguix, Justine Braguy, Sophia L Samodelov, Tim Blomeier, Rocio Ochoa‐Fernandez, Wilfried Weber, Salim Al‐Babili, David Alabadí, Miguel A Blázquez, Matias D Zurbriggen

A combination nutritional supplement reduces DNA methylation age only in older adults with a raised epigenetic age

Lisa J Schmunk, Daniel E. Martin-Herranz Kirsty C McGee, Jack Sullivan, Jon Hazeldine, Daniel E Martin-Herranz, Thomas Jackson, Janet M Lord

Genomic discovery and functional validation of MRP1 as a novel fetal hemoglobin modulator and potential therapeutic target in sickle cell disease

Lisa J Schmunk Yannis Hara, Emily Kawabata, Viktor T Lemgart, Paola G Bronson, Alexandra Hicks, Robert Peters, Sriram Krishnamoorthy, Jean-Antoine Ribeil, Jennifer Eglinton, Nicholas A Watkins, David J Roberts, Emanuele Di Angelantonio, John Danesh, William J Astle, Dirk S Paul, Samuel Lessard, Adam S Butterworth

A novel framework to build saliva-based DNA methylation biomarkers: quantifying systemic chronic inflammation as a case study

Lisa J Schmunk, Toby P Call, Hira Javaid, Vanja Jovicevic, Drago Kojadinovic, Natacha Tomkinson, Emma Stone, Miloš Gavrilov, Rob Thompson, Thomas M Stubbs, Daniel E Martin-Herranz Daniel L McCartney, Waylon J Hastings, Eliska Zlamalova, Kirsty C McGee, Jack Sullivan, Archie Campbell, Andrew M McIntosh, Veronika Óvári, Karl Wishart, Christian E Behrens, Thomas Jackson, Janet M Lord

The origins and vulnerabilities of two transmissible cancers in Tasmanian devils

Daniel E. Martin-Herranz Maximilian R Stammnitz, Tim HH Coorens, Kevin C Gori, Dane Hayes, Beiyuan Fu, Jinhong Wang, Ludmil B Alexandrov, Adrian Baez-Ortega, Syd Barthorpe, Alexandra Beck, Francesca Giordano, Graeme W Knowles, Young Mi Kwon, George Hall, Stacey Price, Ruth J Pye, Jose MC Tubio, Hannah VT Siddle, Sukhwinder Singh Sohal, Gregory M Woods, Ultan McDermott, Fengtang Yang, Mathew J Garnett, Zemin Ning, Elizabeth P Murchison

Freshwater monitoring by nanopore sequencing

Daniel E. Martin-Herranz Lara Urban, Andre Holzer, J Jotautas Baronas, Michael B Hall, Philipp Braeuninger-Weimer, Michael J Scherm, Daniel J Kunz, Surangi N Perera, Edward T Tipper, Susannah J Salter, Maximilian R Stammnitz

Multi‐omic rejuvenation of naturally aged tissues by a single cycle of transient reprogramming

Daniel E. Martin-Herranz Dafni Chondronasiou, Diljeet Gill, Lluc Mosteiro, Rocio G Urdinguio, Antonio Berenguer‐Llergo, Mònica Aguilera, Sylvere Durand, Fanny Aprahamian, Nitharsshini Nirmalathasan, Maria Abad, Camille Stephan‐Otto Attolini, Neus Prats, Guido Kroemer, Mario F Fraga, Wolf Reik, Manuel Serrano

Insight into the Family of Na+/Ca2+ Exchangers of Caenorhabditis elegans

Daniel E. Martin-Herranz Vishal Sharma, Chao He, Julian Sacca-Schaeffer, Eric Brzozowski, Zelda Mendelowitz, David A Fitzpatrick, Damien M O’Halloran

On the epigenetic ageing clock in humans

Daniel E. Martin-Herranz

Vitamins etc, appear to slow down epigenetic aging and reduce inflammation–March 2024

Lisa J Schmunk, Daniel E Martin-Herranz, Kirsty C McGee, Jack Sullivan, Jon Hazeldine, Thomas Jackson, Janet M Lord